Publications – University of Copenhagen

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Publications

"Precise integration of inducible transcriptional elements (PrIITE) enables absolute control of gene expression." Pinto R, Hansen L, Hintze J, Almeida R, Larsen S, Coskun M, Davidsen J, Mitchelmore C, David L, Troelsen JT, Bennett EP (2017):  Nucleic Acids Res (Epub ahead of print)

"Genome editing using FACS enrichment of nuclease-expressing cells and idel detection by amplicon analysis." Lonowski LA, Narimatsu Y, Riaz A, Delay CE, Yang Z, Niola F, Duda K, Ober EA, Clausen HWandall HH, Hansen SH, Bennett EP & Frödin M (2017): Nature Protocols 12(3):581-603. 

A Strategy for O-Glycoproteomics of Enveloped Viruses-the O-Glycoproteome of Herpes Simplex Virus Type 1.” Bagdonaite I, Nordén R, Joshi HJ, Dabelsteen S, Nyström K, Vakhrushev SY, Olofsson S, Wandall HH. PLoS Pathog. 2015 Apr 1;11(4)

Fast and sensitive detection of indels induced by precise gene targeting”. Yang Z, Steentoft C, Hauge C, Hansen L, Thomsen AL, Niola F, Vester-Christensen MB, Frödin M, Clausen H, Wandall HH, Bennett EP. Nucleic Acids Res. 2015 Mar 9. pii: gkv126. [Epub ahead of print]

Immature truncated O-glycophenotype of cancer directly induces oncogenic features” Radhakrishnan P, Dabelsteen S, Madsen FB, Francavilla C, Kopp KL, Steentoft C, Vakhrushev SY, Olsen JV, Hansen L, Bennett EP, Woetmann A, Yin G, Chen L, Song H, Bak M, Hlady RA, Peters SL, Opavsky R, Thode C, Qvortrup K, Schjoldager KT, Clausen H, Hollingsworth MA, Wandall HH. PNAS. 2014 Sep 30; Epub 2014 Aug 12.

Precision genome editing: a small revolution for glycobiology”. Steentoft C, Bennett EP, Schjoldager KT, Vakhrushev SY, Wandall HH, Clausen H. Glycobiology. 2014 Aug;24(8):663-80. doi: 10.1093/glycob/cwu046. Epub 2014 May 26.

High-efficiency genome editing via 2A-coupled co-expression of fluorescent proteins and zinc finger nucleases or CRISPR/Cas9 nickase pairs”. Duda K, Lonowski LA, Kofoed-Nielsen M, Ibarra A, Delay CM, Kang Q, Yang Z, Pruett-Miller SM, Bennett EP, Wandall HH, Davis GD, Hansen SH, Frödin M. Nucleic Acids Res. 2014 Jun;42(10):e84. doi: 10.1093/nar/gku251. Epub 2014 Apr 21.

Glycoengineering of human cell lines using zinc finger nuclease gene targeting: SimpleCells with homogeneous GalNAc O-glycosylation allow isolation of the O-glycoproteome by one-step lectin affinity chromatography”. Steentoft C, Bennett EP, Clausen H. Methods Mol Biol. 2013;1022:387-402. doi: 10.1007/978-1-62703-465-4_29.

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology
Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Paul Bennett E, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H.
EMBO J. 2013 Apr 12

Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines. Steentoft C, Vakhrushev SY, Vester-Christensen MB, Schjoldager KT, Kong Y, Bennett EP, Mandel U, Wandall H, Levery SB, Clausen H.
Nat Methods. 2011 Oct 9;8(11):977-82